PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG071400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 394aa MW: 42997.5 Da PI: 4.6365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG071400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.4	3e-15	12	147	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atks 80 lppG+ F+P+ e v +yL++ +g + e+++vi +vdiy+ P L + ++ +++w ++ + + r++r +++ Pavir.3NG071400.1.p 12 LPPGVYFNPSAAECVRNYLRPWNAGVRPETDRVIVDVDIYSDRPDALLRgrepgFSRGLDHKWLLLTHCVRLCGgkgrGKARAKRnVATG 101 79**************************999**********6335565334456789666655554442221566888867779 PP NAM 81 gyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyr 127 g Wk ++k+v + ++e+ ++t fy g+kt W+m+e + Pavir.3NG071400.1.p 102 GNWKVEQRTKAVADDGEEDspgADRRRTNGFY----LGGVKTPWLMEELT 147 **********74444666899***....6799*****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-17	5	170	IPR003441	NAC domain
PROSITE profile	PS51005	21.721	12	174	IPR003441	NAC domain
Pfam	PF02365	2.3E-7	13	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MAAAAPFQLQ PLPPGVYFNP SAAECVRNYL RPWNAGVRPE TDRVIVDVDI YSDRPDALLR 60 GREPGFSRGL DHKWLLLTHC VRLCGGKGRG KARAKRNVAT GGNWKVEQRT KAVADDGEED 120 SPGADRRRTN GFYLGGVKTP WLMEELTTEE DETTAAGGWR GERLVKVFCK LYVSPRAPAE 180 KKLAGKTKTT LMVDLPADLF DAIAESVYGA QGPGPPPPPP PAPRVLGLEQ CQPAAAAPPP 240 LLRQGEEEVI HMEKRPRLEY DAPPPQPHGD GHSDRSSCVI QAFASQEQGV VTKLHDDDVD 300 GQCGDTDADA KIFQEPEHVA KPPPPQEIPW TATGPPELAH EACKVAESMR DQGCDFIVGD 360 VPDILMCGDD EPPLQLGFDE FFLEDFMKDF PDL*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MAAAAPFQLQ PLPPGVYFNP SAAECVRNYL RPWNAGVRPE TDRVIVDVDI YSDRPDALLR  60
GREPGFSRGL DHKWLLLTHC VRLCGGKGRG KARAKRNVAT GGNWKVEQRT KAVADDGEED  120
SPGADRRRTN GFYLGGVKTP WLMEELTTEE DETTAAGGWR GERLVKVFCK LYVSPRAPAE  180
KKLAGKTKTT LMVDLPADLF DAIAESVYGA QGPGPPPPPP PAPRVLGLEQ CQPAAAAPPP  240
LLRQGEEEVI HMEKRPRLEY DAPPPQPHGD GHSDRSSCVI QAFASQEQGV VTKLHDDDVD  300
GQCGDTDADA KIFQEPEHVA KPPPPQEIPW TATGPPELAH EACKVAESMR DQGCDFIVGD  360
VPDILMCGDD EPPLQLGFDE FFLEDFMKDF PDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG071400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6SXD6	1e-110	A0A3L6SXD6_PANMI; Uncharacterized protein
STRING	Pavir.Cb01983.1.p	1e-135	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13570	17	24

Link Out ? help Back to Top
Phytozome	Pavir.3NG071400.1.p