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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG065200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 207aa MW: 20852.3 Da PI: 5.1832 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.5e-06 | 5 | 46 | 6 | 41 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ e+ C ++ lC+ C + H+ H++v Pavir.3NG065200.1.p 5 CDACGRAEAAVLCCADEAALCRRCDAAVHSAnrlagrHSRVA 46 *****************************6577888888775 PP | |||||||
2 | zf-B_box | 24.4 | 6.1e-08 | 69 | 104 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 + C+ ++ek +fC +++ llC C ++ H H Pavir.3NG065200.1.p 69 PACDICQEKTGYFFCLEDRALLCWPCDVAVHAAgaH 104 67****************************965673 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.712 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.9E-8 | 5 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.22E-6 | 5 | 47 | No hit | No description |
SMART | SM00336 | 1.2E-12 | 66 | 113 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.072 | 66 | 113 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-5 | 69 | 95 | No hit | No description |
Pfam | PF00643 | 4.3E-6 | 69 | 104 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MKIGCDACGR AEAAVLCCAD EAALCRRCDA AVHSANRLAG RHSRVALLSS TAGGPTPDAA 60 IVDGSGSHPA CDICQEKTGY FFCLEDRALL CWPCDVAVHA AGAHVASHRR FLITGVRVGG 120 GVVVSPATSS GNGSSSAPDS SGNPTTLPDK ARPSSSVSAA AATEGLSGQQ WPWSEFLADD 180 VGVVMDHPDL CCPAEISEPG SSSLTG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG065200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805930.1 | 5e-97 | B-box zinc finger protein 23-like | ||||
Swissprot | Q9SYM2 | 1e-40 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A2T7E627 | 1e-104 | A0A2T7E627_9POAL; Uncharacterized protein | ||||
STRING | Si024510m | 1e-90 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 5e-31 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG065200.1.p |