PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG061100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 713aa    MW: 80728.5 Da    PI: 5.7683
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG061100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.23.6e-2581170289
                 FAR1   2 fYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          fYneYA+++GF  r+ +s++sk ++e +++++fvCs+eg  ++++++  + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH+
  Pavir.3NG061100.1.p  81 FYNEYARRLGFPFRVGRSRRSKGTEEvVVMKRFVCSREGVYKKKQTSpdEATRKRERMSMREGCNAMMEVVRE-SDHWVVSKLEKAHNHD 169
                          9********************766551789*********99999988777888899***************99.9**************9 PP

                 FAR1  89 l 89 
                          l
  Pavir.3NG061100.1.p 170 L 170
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2281170IPR004330FAR1 DNA binding domain
PfamPF105511.9E-27264355IPR018289MULE transposase domain
PROSITE profilePS5096611.35543579IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-8550576IPR007527Zinc finger, SWIM-type
SMARTSM005750.002554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEGERAEGDE LIDDYVDCLM SLDTNARAGP SDVLILGAPV VEGAVGGGTE PDAMRDFASA  60
EDPKEPVLGM TFESDEAAKA FYNEYARRLG FPFRVGRSRR SKGTEEVVVM KRFVCSREGV  120
YKKKQTSPDE ATRKRERMSM REGCNAMMEV VRESDHWVVS KLEKAHNHDL GTCSTKVGYL  180
RARGLLGGSD KVTMLGPDEM AFLRQNVLGE GGDAQGLIDY LKKAQANDPA FSHAIQVDKN  240
GCVVNVFWAD ARAKAAYRHF GDAVTFDTSY KKNKYMMPFV TFSGVNHHLQ PVIFGCAFLM  300
EETEFSFVWL FETWLSAMGG KAPCSLVTDQ NRAMKAAIVK VFPNSCHRFC KWNILSRTKQ  360
KLTHAYTEHP TLRDELESCV LESETIPTFE TKWTSIIDKY DLRKNSWLQA IYSIRQKWIP  420
LYLMDTFFAE IAPTWKLETM NDFYKKYFNT KTTLEVFLNQ FNLSMASQYE DEAKADMDTY  480
LNKATTKTAS LIEKQAASTY TKAIFSKFQE EFTESLGFII QKTSDGCISK YSIRKDEDPT  540
ETFYVTYNAS NKMAKCSCKY FEFSGILCRH ILGVYIIVDP RTLPPDYFLR RWTRKARDDD  600
ALLEENNNYD DEDPSQSITS RYNVLCVNAI RCAEKGSGSE AVYKAAKDIL QKAYQEIIAY  660
ERNPGRGSQR DAININEDVT IDDAMNDQSM PDSGPKVTNL LGQFLVSSWS PV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.353351e-35callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG061100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693780.0AC169378.2 Sorghum bicolor clone SB_BBc0007L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810005.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7E6790.0A0A2T7E679_9POAL; Uncharacterized protein
STRINGPavir.Cb01881.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-157FAR1-related sequence 5