 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG045500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 225aa MW: 23344.6 Da PI: 6.6286 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG045500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.2 | 0.00026 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C++ F++ L H++ H
Pavir.3NG045500.1.p 58 YECVFCKRGFTTAQALGGHMNIH 80
99*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MDSGSKMESS KAASSGDGAM TTSPEPESAA AAAGGGGEEE AAVSPPAPAA AASPRPYYEC 60
VFCKRGFTTA QALGGHMNIH RRDRAKPPAR DSPTGITSVS HNVECYNKYR HLVSPPPYPP 120
AQSTPIPVGA GSSFAMYYVS SGTAAAGARL DAEGGSPSSV SPRELSLFGE ANRDQDLHLG 180
LGHQGHIGGG SRTPDEGGPE RQQYSGEPER ELDLELRLGR RPRR*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC145477 | 2e-40 | AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence. |
| GenBank | AP014961 | 2e-40 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
