PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG044100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19229.3 Da PI: 12.0136 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.7 | 6.2e-18 | 72 | 110 | 9 | 47 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 r+++ Rrng+lKKA+ELSvLCdae a+iifss++kl+ Pavir.3NG044100.1.p 72 RTTSSRSRRNGLLKKAYELSVLCDAEFALIIFSSHDKLR 110 7888889****************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.7E-10 | 49 | 115 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-14 | 71 | 115 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-14 | 72 | 109 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.979 | 72 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-12 | 78 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-12 | 93 | 114 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MATQLELLAG CSFRINSRLG WWWRGTRALV TALISPAGAA IHSHRSRARG RGRRKVTRIS 60 ARPLAPHLQP ARTTSSRSRR NGLLKKAYEL SVLCDAEFAL IIFSSHDKLR VREHRRVVES 120 STPVLLYISA LRRHCSSGTR WRRQTEQCFQ NYGCRGCYKV IWEPKVST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG044100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035373 | 2e-39 | BT035373.1 Zea mays full-length cDNA clone ZM_BFb0058A05 mRNA, complete cds. | |||
GenBank | KJ727563 | 2e-39 | KJ727563.1 Zea mays clone pUT5423 MADS transcription factor (MADS12) mRNA, partial cds. | |||
GenBank | MZEMADSA | 2e-39 | L46397.1 Zea mays MADS-box protein (ZAG3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Cb01739.1.p | 1e-119 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-12 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG044100.1.p |