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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG031100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
TCP |
| Protein Properties |
Length: 400aa MW: 40434.2 Da PI: 6.4547 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG031100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 129.3 | 3.8e-40 | 94 | 237 | 3 | 129 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..k 89
++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ + + s +s a++ + +
Pavir.3NG031100.1.p 94 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-NptR 182
789*****************************************************************77732333333222222.2353 PP
TCP 90 aaksaa.kskksqksaasalnlakesr................akarararertrek 129
aa++ a ++ +++aa ++++ s + +a r+r re+
Pavir.3NG031100.1.p 183 AAPFPAlALHPHHHQAA--PAPHDMSAmmgyhhhllppqqqdpSAGDAYMRKRYRED 237
33333323333333333..33333333333333344444444433344444555555 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MDHGGGGGGG GGAPSSSNSA GATAAAGGAS GGHPFYYAGP AGSNSGVPQQ QQPSPFAGAL 60
AITPVPEQAQ PSSAAGADKK ALVPAAAPAA GPVVAKRPSK DRHTKVDGRG RRIRMPALCA 120
ARVFQLTREL GHKSDGETIE WLLQQAEPAI LAATGTGTIP ANYSSLNISI RSGAAAAANP 180
TRAAPFPALA LHPHHHQAAP APHDMSAMMG YHHHLLPPQQ QDPSAGDAYM RKRYREDLFK 240
EDDDRQDPSA PKAREQQAAT PPPPPSAAMW AVGPNAAAPS GGFWMLPVSA SSAAAARPAE 300
QPMWSFSGGG GGTATVQAPL QFMSRASYPS SAGGGGGGMS ETNIGMLAGL NAYNRGGSED 360
QQQHQQPEGD QQHGGEGGGN EEEGGDDSGE ENHGNNSSQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
