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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG009100.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 381aa MW: 42643.7 Da PI: 8.7046 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG009100.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 221.2 | 5.2e-68 | 66 | 358 | 127 | 374 |
GRAS 127 aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhr 212
Ll+ + R++gpp++R+T+v++ +++ l +++ L++ A++l++pf+f+ v rle+l++++L ++k gEa+a++++lq+hr
Pavir.3NG009100.1.p 66 ELLHDFHGRQGGPPEVRLTVVHD----DNDYLANMRTLLSNEADKLNIPFQFSS-VIGRLETLDFSNLrntlDIKYGEAIAISCSLQMHR 150
599********************....9**************************.799999999988854447777************** PP
GRAS 213 ll...........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
ll + + ++++ ++L++v+ l+P+++ v+eq+a+hn+ F +rf+e
Pavir.3NG009100.1.p 151 LLvvddkvscsgigqlqkmaniaqlkqmassvyspastlnypqtpSPQCKTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVE 240
******************************************998666677778889********************************* PP
GRAS 260 aleyysalfdsleakl...preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
al+yy+alfd+l+a + pr ++er+ vEr++lg+ei+n++ ceg +r erhe+l++W + ++++GF vpls +a + + l +++
Pavir.3NG009100.1.p 241 ALNYYAALFDCLHALVaanPRRADERARVERMILGEEIRNILVCEGVHRHERHERLSQWAMHMDRSGFDHVPLSFRAIWEGNQKLMSFGF 330
************88761125566******************************************************************* PP
GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
g + + es++l+l+W +r +s+SaWr
Pavir.3NG009100.1.p 331 SGCQSKVESDCLLLCWGSRHHYSISAWR 358
***************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MIGNLRREAN IDRGARYPSP QRPRSPSRGH HPGSNGAPAH ARPPPGWLWL SALSTCPAQP 60
PTHGSELLHD FHGRQGGPPE VRLTVVHDDN DYLANMRTLL SNEADKLNIP FQFSSVIGRL 120
ETLDFSNLRN TLDIKYGEAI AISCSLQMHR LLVVDDKVSC SGIGQLQKMA NIAQLKQMAS 180
SVYSPASTLN YPQTPSPQCK TPKLLASFLN AVRALKPNIM LVMEQDANHN ALLFCDRFVE 240
ALNYYAALFD CLHALVAANP RRADERARVE RMILGEEIRN ILVCEGVHRH ERHERLSQWA 300
MHMDRSGFDH VPLSFRAIWE GNQKLMSFGF SGCQSKVESD CLLLCWGSRH HYSISAWRPH 360
IGSASGSRDH MLVQPQRQIK *
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