PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG008900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 516aa    MW: 55680.2 Da    PI: 7.4676
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG008900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.39.1e-78454002287
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          + lL++cA  v++g + +a+++L+++ + as d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +     aa++ ++++ P+
  Pavir.3NG008900.1.p  45 IGLLYQCAGEVAAGAFDRANHCLEQITQVASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTSNS-AEAHLIPAARRHLFDMLPF 133
                          679*******************************99**************************99665555.344555578888******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          +k+++lt+N+aIlea+ege+ vH++D++  +s+++QW+aL++a+ +R++gpp+lRiT+v++    +ke l +++  Lak Ae+l++pf+f
  Pavir.3NG008900.1.p 134 MKLAYLTTNHAILEAMEGEKFVHVVDLSgpASNPVQWIALFHAFRARRGGPPHLRITAVHD----DKEFLANMAGALAKDAEALDIPFQF 219
                          ***************************87789*****************************....************************* PP

                 GRAS 179 nvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.................................................. 214
                          ++ v+ rl+dl++++L    rv++gEala+++v qlhrll                                                  
  Pavir.3NG008900.1.p 220 SA-VEARLDDLDPDALrqllRVRSGEALAISVVAQLHRLLaaddagrrhvpgsscltpvqiiarsspssfgellerelntrlqlspdass 308
                          **.799*****9988766668999****************************************************************** PP

                 GRAS 215 .................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikv 285
                                           +++ + + +  ++L++v+ lsPk++vv+e ea+hn++ Flerf eal+yy++lfd+le   +++    er+ v
  Pavir.3NG008900.1.p 309 vvsslspqspvlqaaaqQQQRPAAAKLGSFLQAVRALSPKIMVVAEPEANHNAAAFLERFEEALNYYASLFDCLERASAAHRcaAERARV 398
                          ***************985555666679***********************************************6654433345888888 PP

                 GRAS 286 Er 287
                          Er
  Pavir.3NG008900.1.p 399 ER 400
                          87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.2618460IPR005202Transcription factor GRAS
PfamPF035143.2E-7545400IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDIFPEDMVS SATSSPASSL HSPSPHGYGS WVQELSHDQQ GVRLIGLLYQ CAGEVAAGAF  60
DRANHCLEQI TQVASLDAPH TLQRLAAVFA DALARKLLNL VPGLSRALLS TSNSAEAHLI  120
PAARRHLFDM LPFMKLAYLT TNHAILEAME GEKFVHVVDL SGPASNPVQW IALFHAFRAR  180
RGGPPHLRIT AVHDDKEFLA NMAGALAKDA EALDIPFQFS AVEARLDDLD PDALRQLLRV  240
RSGEALAISV VAQLHRLLAA DDAGRRHVPG SSCLTPVQII ARSSPSSFGE LLERELNTRL  300
QLSPDASSVV SSLSPQSPVL QAAAQQQQRP AAAKLGSFLQ AVRALSPKIM VVAEPEANHN  360
AAAFLERFEE ALNYYASLFD CLERASAAHR CAAERARVER LSGPYTWVLG FLALAPRLGP  420
AVRCSFPANA VAADRWSPAI SSVEALTGRR YGSECHRPRT RIARQGIISN GDKVFDGIQA  480
QTNRGSVREE ATSSKRTCVN SPAAWSTVHN VSDFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-24322487217Protein SCARECROW
5b3h_A2e-24322486216Protein SCARECROW
5b3h_D2e-24322486216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG008900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLA0A3L6RCH90.0A0A3L6RCH9_PANMI; Scarecrow-like protein 3
STRINGPavir.Cb02147.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-67scarecrow-like 3