PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG553300.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 193aa MW: 21334.4 Da PI: 9.5202

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG553300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	231.8	1.6e-71	5	164	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 + ++++vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvnl+ ++ l+ +++ +l++ k ++ n + + ++s+ Pavir.3KG553300.2.p 5 IAPAADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCANLLSVNLRALMHSLPEQQD--------QLQNIKAHGINGSHLEFGSSSS 86 67789*************************************************9986........7888888888877777766666 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ ++ne+ ++++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl Pavir.3KG553300.2.p 87 KFRLPMMYSPQNEHLLLQEQTLSARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 164 666666443444444444445589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.1E-73	9	164	IPR006780	YABBY protein
SuperFamily	SSF47095	2.88E-8	109	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.2E-5	111	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSVQIAPAAD HVCYVHCNFC NTVLAVSVPG NSMLNIVTVR CGHCANLLSV NLRALMHSLP 60 EQQDQLQNIK AHGINGSHLE FGSSSSKFRL PMMYSPQNEH LLLQEQTLSA RPPEKRQRVP 120 SAYNRFIKEE IRRIKANNPD ISHREAFSTA AKNWAHYPNI HFGLSPGREG GKKLVDEAVS 180 ASPAPKKIQG LY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.2527	0.0	callus\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269\|PubMed:17216490}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG553300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035812	3e-76	BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBank	BT041668	3e-76	BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
GenBank	BT068409	3e-76	BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
GenBank	KJ726849	3e-76	KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804908.1	1e-138	protein YABBY 6-like isoform X2
Swissprot	Q2QM17	3e-92	YAB6_ORYSJ; Protein YABBY 6
TrEMBL	A0A2T8KM20	1e-136	A0A2T8KM20_9POAL; Uncharacterized protein
STRING	Si023308m	1e-125	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-60	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG553300.2.p