PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG547300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 290aa    MW: 30658.5 Da    PI: 6.8688
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG547300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1081.4e-33391551111
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesss 79 
                          aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a  ai+el+++           ss++a  + +++++
  Pavir.3KG547300.1.p  39 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAGAIDELPSLdcsfalpagasSSPPA--AGDDAEV 126
                          6899*************************************************************9999997754322222..2223333 PP

                  TCP  80 ssasnsssgkaaksaakskksqksaasalnla 111
                          s++++s   k++  +  + ++++ +++a++++
  Pavir.3KG547300.1.p 127 STSETS---KSSVLSLANGPTDNATTAAHQVN 155
                          332222...22222222222222222223333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3341150IPR005333Transcription factor, TCP
PROSITE profilePS5136932.37542100IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEEVGMELER TACKRPRAAL DGGTAAAAAW RTCRVARAAA GGKDRHSKVV TARGLRDRRV  60
RLSVPTAIQF YDIQDRLGVD QPSKAIEWLI RAAAGAIDEL PSLDCSFALP AGASSSPPAA  120
GDDAEVSTSE TSKSSVLSLA NGPTDNATTA AHQVNHAYNG GSFAELLHCS ANDSKPMQQP  180
TLAYYAAQLP SSHAAPVMSF ETMPQLAFLQ EQPHPAVGFD RGTLQSNVTV AAPLWPPSQH  240
ACFLQRFAAA PVDAAGLQFF LGGGTAPPPV TVNAEPRLQL WDFKQERKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2347101155Putative transcription factor PCF6
5zkt_B4e-2347101155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG547300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810054.11e-177transcription factor PCF8-like
SwissprotA2ZMR99e-94PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3L6T2890.0A0A3L6T289_PANMI; Transcription factor PCF8
STRINGPavir.Ca02949.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.25e-30TCP family protein