![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG543200.3.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 458aa MW: 47890.1 Da PI: 7.0654 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG543200.3.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pvi&pid=Pavir.3KG543200.3.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 53.1 | 5.5e-17 | 269 | 315 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ +L+el+P++ K +Ka++L +A+eY+k Lq
Pavir.3KG543200.3.p 269 VHNLSERRRRDRINEKMKTLQELIPHC-----NKTDKASMLDEAIEYLKTLQ 315
6*************************8.....6******************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 458 aa
Download sequence Send
to blast |
MTQYVPDWSS GMGDAFATFN GGDDDGLMEL LWCNGHVVMQ SQAPRKPARP EKVAAPAAAA 60 AAALDDEAAA WFQYPAEDAL ERDLFTELFG EAPAAGAGGS GRACKEEAGC AGEAAARRSG 120 TMMPPQPRKK ACPGDIGDVS DGAAARAAAA GGERAATATE AVESSMLTVG PSFCGSNHVQ 180 APRAPPPPGA AGKAGGRACD AATVTSSSMR PRSCTTRAGQ AGAAAHRSSK RRPSDATETE 240 DAEFQSADAT CELPAQKLTT AKRRRAAEVH NLSERRRRDR INEKMKTLQE LIPHCNKTDK 300 ASMLDEAIEY LKTLQLQLQM MWMGGGMAAA AAPVMFPAGV HQYMQRMVAS PHVASMPRMP 360 FLAPPAVQSP PGADPYAHYL AVDHLQPPPA AAAAPMHYLQ GMGFYQQQQS PALPPPPPPA 420 VPATSLPAAT ARTSPPDGTL HKKYENCGKT EIQGITS*
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Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Pvi&pid=Pavir.3KG543200.3.p) |
No. |
Start |
End |
Sequence |
1 | 262 | 277 | RRRAAEVHNLSERRRR |
2 | 273 | 278 | ERRRRD |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT055876 | 7e-79 | BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds. |