PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG537000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 830aa    MW: 90500.6 Da    PI: 7.2674
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG537000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-182380457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Pavir.3KG537000.1.p 23 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80
                         6789****************************************************97 PP
2START1662.6e-521723792204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +e++ vi +g  g
  Pavir.3KG537000.1.p 172 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRHVEIVHVIPTGngG 260
                          68999*****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++al++l+  Rdf+++Ry+  l +g++vi+++S+++ +  p+    + ++Rae+lpSg+li+p+++g+s + +v+hvdl+++
  Pavir.3KG537000.1.p 261 TIELIYMQTYALTTLAGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPSgpnAPTFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLNAK 350
                          ***************999****************************99999999************************************ PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s  + ++k++ a+l++ +
  Pavir.3KG537000.1.p 351 SVPEVLRPLYESPKILAQKMTAAALRHIR 379
                          ************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241781IPR001356Homeobox domain
SMARTSM003898.5E-151985IPR001356Homeobox domain
SuperFamilySSF466892.01E-162184IPR009057Homeodomain-like
CDDcd000861.53E-152282No hitNo description
PfamPF000469.3E-162380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-182480IPR009057Homeodomain-like
CDDcd146862.31E-674113No hitNo description
PROSITE profilePS5084827.813162362IPR002913START domain
CDDcd088757.00E-66166382No hitNo description
Gene3DG3DSA:3.30.530.201.3E-23170354IPR023393START-like domain
SMARTSM002341.2E-43171381IPR002913START domain
PfamPF018522.4E-50172379IPR002913START domain
SuperFamilySSF559614.26E-37172382No hitNo description
PfamPF086702.8E-39686828IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MAAVASRERL SPGAAPQVDT GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRDCPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYDNG  120
YMKNQLHSPS VATTDTSCES VVTSSQHYQQ QNPAVPPPPQ RDANNPAGLL AIAEETLAEF  180
MSKATGTAVN WVQMVGMKPG PDSIGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS  240
WYRDCRHVEI VHVIPTGNGG TIELIYMQTY ALTTLAGPRD FWTLRYTSGL DDGSLVICER  300
SLTQSTGGPS GPNAPTFIRA EVLPSGYLIR PCEGGGSMIY IVDHVDLNAK SVPEVLRPLY  360
ESPKILAQKM TAAALRHIRQ IAHESSGEIP FGAGHQPAVL RTFSQRLSRI LQLQSNSSPN  420
KLVGSHVSLS PFFSAIGGGI MCAKASMLLQ NVPPALLVQF LREHRSEWAD PGVDAYSAAS  480
LRANPYAVPG LRAGGFMGTQ VILPLARTLE HEESLEVIRL EGHGFSHDEV LMSRDMFLLQ  540
LCSGVDENAP GACAQLVFAP IDESFADDAP LLPSGFRVIP LDDKMDMPTA TRTLDLASAL  600
EVGSGAGLRA PSDASGACTT RSVLTIAFQF SFENHLRESV AAMARQYVRG VMASVQRVAM  660
AIAPSRLGSH IQLKHPHPPG SPEALALATW IGRSYRVHTG MEIRWSDTEG AENPLMPFWK  720
HSDAILCCSL KPPFTLKFAN SAGFDILETT MVNIQDMPLE AVLDDEGRKA LFTELPKIMQ  780
QGWAYLPGGV CRSSMGRQAS YEQAVAWKVV GDDGAPQGLA LMLANWTFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG537000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674830.0BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.
GenBankHQ8587840.0HQ858784.1 Zea mays clone UT1770 HB homeobox transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808876.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A2S3HFV40.0A0A2S3HFV4_9POAL; Uncharacterized protein
STRINGSi021201m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]