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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG535400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LSD |
Protein Properties |
Length: 209aa MW: 21987.6 Da PI: 8.5521 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG535400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 41.6 | 2e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr lL YPrGApsV+Ca+C++V
Pavir.3KG535400.1.p 7 CHGCRSLLLYPRGAPSVCCAVCHAV 31
************************9 PP
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2 | zf-LSD1 | 43.9 | 3.9e-14 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y+r+A+ VRC++CdtV
Pavir.3KG535400.1.p 75 CGGCQTLLMYTRNATTVRCSCCDTV 99
************************9 PP
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3 | zf-LSD1 | 50.5 | 3.3e-16 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+t+L+YP+GApsV+Ca+C+++
Pavir.3KG535400.1.p 113 CGQCQTVLMYPYGAPSVKCAICNFI 137
***********************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHA VTTVPPPGSA SELWFLLVHN RTSKAHALAH 60 PAHEQKGMEM ARLICGGCQT LLMYTRNATT VRCSCCDTVN LVRPVSSIAH VNCGQCQTVL 120 MYPYGAPSVK CAICNFITNI GGHQVPMVRP LPPALPASSG NSYNIPSTSA PTSQSQNVTV 180 VVENPMTVDD KGKLVSNVVV GVTTGGKK*
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF314699 | 0.0 | KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence. |