PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG530600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 123aa MW: 13836.2 Da PI: 5.9067 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 3.8e-10 | 86 | 118 | 4 | 36 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 k+ rr+ +NRe+Ar sR+RK+a + Le v Pavir.3KG530600.3.p 86 TKKMRRMLSNRESARQSRKRKQAHLTDLESQVS 118 6999*************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 8.588 | 85 | 122 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-8 | 86 | 118 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.94E-8 | 87 | 119 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.5E-8 | 87 | 119 | No hit | No description |
CDD | cd14702 | 1.26E-12 | 88 | 118 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 90 | 105 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MCGLESIQAL LQHSNHQPPL CFTYFYCHLL LSLIPHTDDG DGATLVINSN IIDHEDFRGN 60 PANNGTSKEQ SDDDGDLEEN TDPANTKKMR RMLSNRESAR QSRKRKQAHL TDLESQVSNR 120 DR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 106 | SRKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG530600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805357.1 | 3e-47 | light-inducible protein CPRF2-like | ||||
TrEMBL | A0A2T7EJ00 | 7e-58 | A0A2T7EJ00_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EJ03 | 4e-58 | A0A2T7EJ03_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02738.1.p | 7e-49 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 7e-11 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG530600.3.p |