PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG530600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 160aa    MW: 18044.1 Da    PI: 6.5096
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG530600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.3e-1586140458
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                           k+ rr+ +NRe+Ar sR+RK+a +  Le  v +L++eN +L k+l  ++++++ 
  Pavir.3KG530600.2.p  86 TKKMRRMLSNRESARQSRKRKQAHLTDLESQVSKLTSENASLLKRLADMTQKYKD 140
                          6999***********************************9999666666665554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-1683147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.15185137IPR004827Basic-leucine zipper domain
PfamPF001706.9E-1486139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.6E-1487139No hitNo description
SuperFamilySSF579591.06E-1287138No hitNo description
CDDcd147027.87E-1988138No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MCGLESIQAL LQHSNHQPPL CFTYFYCHLL LSLIPHTDDG DGATLVINSN IIDHEDFRGN  60
PANNGTSKEQ SDDDGDLEEN TDPANTKKMR RMLSNRESAR QSRKRKQAHL TDLESQVSKL  120
TSENASLLKR LADMTQKYKD ATLDNRNLTV DVETMRRKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55323e-51callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
UniprotTISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG530600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805357.15e-78light-inducible protein CPRF2-like
SwissprotQ6ETX03e-27RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A2T7EJ001e-88A0A2T7EJ00_9POAL; Uncharacterized protein
TrEMBLA0A2T7EJ036e-89A0A2T7EJ03_9POAL; Uncharacterized protein
STRINGPavir.Ca02738.1.p9e-79(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-23basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]