PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG506800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 389aa    MW: 41344.8 Da    PI: 11.9808
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG506800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.48.8e-09154222872
             trihelix   8 laLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrt 72 
                           +Liea+r ++e+lr+g+l++++  +v +++        + + +s +qC +k+e+l+kry+++  ++ +r+
  Pavir.3KG506800.1.p 154 STLIEAYRGRWEALRKGNLQAAD--DVTNAVterrgrFPTAMPKSGVQCHHKIEKLRKRYRAESSRAAGRS 222
                          58***************887765..4444444444555566799*******************99988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-9151223No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRQMSSASNA NSFIPSLRPL HVEIFLLPGN SFHGNCQVWI FTPGRQGRPR STAITRTFPS  60
IARRNTVPIK IIMKTGEATR LVAQLIGAPD LVEHATHFSH SPVPYPAPPA PAAPLVVWSP  120
PPSTRAYRRR RRGLLDGQLG ARWRGLRAEA AAASTLIEAY RGRWEALRKG NLQAADDVTN  180
AVTERRGRFP TAMPKSGVQC HHKIEKLRKR YRAESSRAAG RSKGPNGPSS CSSTTSPTVA  240
CQTRAPTPSS RSPPVSTPSL VSSPSSEEAV RSRSLHGLIS NGRASNGLRF TIPKASRSRP  300
AAVARGCFQS REEPQRGGDG SELGGGWAAG GPELLSIQLL GGGPELGRRR WTGGGRVAAG  360
RTPYTATNDA AAPGSAVVTS AARAKEDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70071e-109callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG506800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0433265e-33BT043326.1 Zea mays full-length cDNA clone ZM_BFc0158M15 mRNA, complete cds.
GenBankEU9427175e-33EU942717.1 Zea mays clone 1532102 mRNA sequence.
GenBankEU9658485e-33EU965848.1 Zea mays clone 289347 hypothetical protein mRNA, complete cds.
GenBankKJ7278565e-33KJ727856.1 Zea mays clone pUT5902 trihelix transcription factor (THX28) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-11Trihelix family protein