PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG479200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 213aa MW: 23000 Da PI: 9.0227

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG479200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	69	92	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg+ F +k L H ++ H Pavir.3KG479200.1.p 69 FSCPSCGREFQSKGALGGHWSRgH 92 89**************99999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.224	69	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDSGEPRTLK VTGMLPEGSD KGFKGCTKNS PAERSLGGHM SCHRLAGMQS KSTPRPAVLG 60 MVPPGPKMFS CPSCGREFQS KGALGGHWSR GHCHPNVAGQ KAKKPEVSKI LSGVALNATR 120 RYYCKNCGEG FDTFQFIGWH KAKCNDVVQC GPEKYYYKYC GQDFPRSRSA SSHMGRCKYK 180 NAPHASSRHV LASDADDDAV DILDAEEANP QG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG479200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ca02435.1.p	1e-158	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-06	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG479200.1.p