PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG372400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 22689.6 Da PI: 10.1076 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r +r++lg+++++ eAa a+++a+ +l+g Pavir.3KG372400.1.p 60 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAAALRG 109 6********.**********88.....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.63E-17 | 59 | 116 | No hit | No description |
SMART | SM00380 | 6.3E-31 | 60 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.47 | 60 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 60 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 60 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-21 | 60 | 117 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.1E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-9 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MQMEWDMRGG GGGGGVGVGV AVGGGARAGG LAAAGGVVVG GGDQHHHQQQ HHHQQRVEAH 60 YRGVRKRPWG RYAAEIRDPW RKTRVWLGTY DSPVEAAMAY DRAAAALRGP KARLNFGGGG 120 GCGRARDGAP AYHPRVPLQA RCQLFAAGLD AGRPSPSPWP HVVCFPPPVL HQTAAPPAWQ 180 PLLAADVAAA QPSTALELRT GPPALPFDLN EPPSNGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-19 | 60 | 116 | 5 | 62 | ATERF1 |
3gcc_A | 8e-19 | 60 | 116 | 5 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG372400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809088.1 | 1e-85 | ethylene-responsive transcription factor RAP2-1-like | ||||
TrEMBL | A0A3L6T1I1 | 5e-86 | A0A3L6T1I1_PANMI; AP2-EREBP transcription factor | ||||
STRING | Pavir.J36215.1.p | 4e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-23 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG372400.1.p |