PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 289aa MW: 31471.2 Da PI: 8.0829

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG355000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.2e-12	136	160	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+ +tG Ck+G++CkF+H++ Pavir.3KG355000.1.p 136 EPVCSFYVKTGKCKFGAKCKFNHPK 160 789********************96 PP
2	zf-CCCH	37.5	3.9e-12	214	239	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ Pavir.3KG355000.1.p 214 PGEVDCSFYMKTGSCKYGSICRFNHP 239 57899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.3	80	107	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.009	80	108	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.901	133	161	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-6	133	160	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	133	160	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-9	136	160	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	138	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.7E-6	213	240	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.788	213	241	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-9	215	239	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.06E-5	217	241	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	219	238	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MFHTLQMPKK QLHFNGSAIS GFFFNFLGYY LVCLSIFGTF WSNHHNVMQL CLLSCNPLND 60 FFFPGLLLQI WNVEDSYPER LGEPDCPYLV KSNRCRLKSK CKFNHSKEKV NALSAGTDNG 120 QSLIADSAIL PVRPSEPVCS FYVKTGKCKF GAKCKFNHPK DVGIAPVIAK ETIYTATTDA 180 AAHIGTADSS VPAKTLAPTA PAEAHNAKGL PIRPGEVDCS FYMKTGSCKY GSICRFNHPY 240 RPVVDIASMA PLVQATLPTP EPIVSAAVLN PVANITQCFD FSCDSSAD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.10299	1e-120	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG355000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815023.1	1e-121	zinc finger CCCH domain-containing protein 8-like isoform X3
Swissprot	Q5ZDJ6	1e-78	C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBL	A0A3L6SUD3	1e-129	A0A3L6SUD3_PANMI; Zinc finger CCCH domain-containing protein 8-like
STRING	Pavir.Ca01257.1.p	1e-160	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5816	37	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-50	floral homeotic protein (HUA1)

Link Out ? help Back to Top
Phytozome	Pavir.3KG355000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhu RS,Xu ZF,Lin MC Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8. J Chem Phys, 2004. 120(14): p. 6566-73 [PMID:15267548]