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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG353500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
CPP |
Protein Properties |
Length: 361aa MW: 40062.2 Da PI: 8.0963 |
Description |
CPP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG353500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCR | 43.9 | 4.9e-14 | 68 | 105 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
+k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk+
Pavir.3KG353500.1.p 68 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKD 105
89**********************************97 PP
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2 | TCR | 49.9 | 6.1e-16 | 153 | 189 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
k+gCnCkks+ClkkYC+C+++g+ Cs C+C+dC+N
Pavir.3KG353500.1.p 153 KRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 189
78**********************************6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MEATPISVKP PSPSPAAAPP AAMDPRDLPT HATAATEVEP SSMNQLAVTV TPDPKRQKLE 60 ETADGNGCKH CACKKSRCLK LYCPCFAGGG YCSEKCGCQP CFNKDAYAET VQTTRKVLLS 120 RQKRMSLKIN RRSEANAEAM EDAHHSSSST PPKRGCNCKK SSCLKKYCDC YQDGTGCSLF 180 CRCDDCQNPF GKNEGIMAED SKRYLYTGAD LDHSEGEHEF VVERSPHLQS PISKESSFHQ 240 TPPHLRASSR DRHVFPQAVS QWQALPRSWH CSNKRNSNDR AMDDSANYKN SNNDWQLPKH 300 EDSYSISKCV QILNGMVELS QVEKSVAPDV FLLPGNREIF ISLGGDVRAM WLKRKIQHLT 360 *
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G22760.1 | 3e-47 | Tesmin/TSO1-like CXC domain-containing protein |