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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG313500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 283aa MW: 30374.2 Da PI: 9.4233 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG313500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 104 | 154 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr++ +g+WvAeIr p + r r++lg+++++e Aa a+++a+ kl+ge
Pavir.3KG313500.1.p 104 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 154
59****999.**********954...5**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDASLRTLPP ASFPGEVRSA VSSLLLSSPG TSALDTVFSH LPPPVTIPPL GSSVYYRQCE 60 LLRHFAASQP QAAACSSSSS SSAASFQAPP DDAAAAAAML RQKLYRGVRQ RQWGKWVAEI 120 RLPQNRVRVW LGTYDSPETA AHAYDRAAFK LRGEYARLNF PGVMDGQDCP EHLRPLRAAV 180 DAKIQAIRAR LARKRARARK QREEGKESAR SEGAKTATAT AARPVVSEGA ATTSETTTTT 240 STTPYGSPDG VLSVSATSAD GDCPLERLPS FDPELIWEML NF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CT837611 | 1e-145 | CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence. |