|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG303500.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
Trihelix |
Protein Properties |
Length: 339aa MW: 36665.3 Da PI: 9.9922 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG303500.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 47.1 | 6.1e-15 | 36 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
+W++ e+ aL+ a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ s +++f+
Pavir.3KG303500.1.p 36 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------SGWSFFH 119
7*****************************************999999999************************97......47***** PP
trihelix 84 qle 86
+l+
Pavir.3KG303500.1.p 120 ELD 122
*98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MEVREMAMAA AAAAAVGGAG GKLPPPNPNL PYREDCWSDG ETAALVSAWG SRYVELNRGN 60 LRQKQWQEVA DAVNSRRGAS ARRRPPRTDV QCKNRVDTLK KKYKAERARN APSGWSFFHE 120 LDRLVGPTLS ASASKRPSPP QAPQFALPFH PPALRNHQSP SPSPPPPMAL PLPDYHRGSP 180 LPAAALIQKA AAAAAAVVSD PEDSDDDGGI NNHNSHRSPS HSVSSLSGDN KKRSRDEAGS 240 GGDKGFKELA RAIEAFAEMY ERVENAKQKH ELEMELQRIE FLKQLEVKRM ENFVDAHVKL 300 ARAKRPKKTT GGAADDAGAM ELVATVASMP FVSTSNFL*
|
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G14180.1 | 6e-30 | sequence-specific DNA binding transcription factors |