PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG285000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 110aa MW: 12252.9 Da PI: 8.6828 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.4 | 1.3e-14 | 43 | 108 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgC 62 +fY++YA +vGF vr+ ++k + ng +t+++f+Cs+eg+r+ ++++ + k++ +r+ r+gC Pavir.3KG285000.1.p 43 EFYKTYAAHVGFPVRVGQHKAK--NGLVTNKRFYCSREGFRKAKDETqsepecSGKRKCERKIARCGC 108 6****************99887..999****************9999888888888888999999999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-11 | 43 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 110 aa Download sequence Send to blast |
MENATPQKSW SVPFCGSSYT PECDDSLKPA VGMTFEDIDS AKEFYKTYAA HVGFPVRVGQ 60 HKAKNGLVTN KRFYCSREGF RKAKDETQSE PECSGKRKCE RKIARCGCL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG285000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827221.1 | 1e-64 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8I9G7 | 2e-63 | A0A2T8I9G7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J26183.1.p | 5e-77 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18960.1 | 3e-12 | FAR1-related sequence 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG285000.1.p |