PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG258500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 368aa MW: 40118.3 Da PI: 7.2968

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG258500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.4	4.9e-16	297	340	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Pavir.3KG258500.1.p 297 RRQKRMIKNRESAARSRARKQAYTNELENKVSHLEEENERLKKQ 340 69***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-14	293	357	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.622	295	340	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-14	297	340	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.46E-26	297	342	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-15	297	341	No hit	No description
SuperFamily	SSF57959	3.56E-12	297	342	No hit	No description
PROSITE pattern	PS00036	0	300	315	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MLFVFGSDHV FYLLTSIFLQ KLLGVHVYAH ILCRVRPWFM IQAMASQAGG GRGGGAGSAQ 60 HGQVQGLSRQ GSLYNLTLDE VQNHLGEPLL SMNFDELLKS VLPDGIDPNG TVIGKPDPAS 120 SLQRQGSIMM PPQLSKKTVD EVWKGIQDGP ETSATDSGRH RRERQPTLGE MTLEDFLVKA 180 GVVSEGLMKD SDDLPSNMNT VGSDVVAGGT SGLNSGAQWL QQYQQQALEF RQPSLVGSYM 240 ASQLAPQPLS VATGAMLDSI YSDGQITSPT VGAFSDPQTP GRKRGASGEV VDKVIERRQK 300 RMIKNRESAA RSRARKQAYT NELENKVSHL EEENERLKKQ KEFDEILSSA LPPEPKHQLR 360 RTSSAAF*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MLFVFGSDHV FYLLTSIFLQ KLLGVHVYAH ILCRVRPWFM IQAMASQAGG GRGGGAGSAQ  60
HGQVQGLSRQ GSLYNLTLDE VQNHLGEPLL SMNFDELLKS VLPDGIDPNG TVIGKPDPAS  120
SLQRQGSIMM PPQLSKKTVD EVWKGIQDGP ETSATDSGRH RRERQPTLGE MTLEDFLVKA  180
GVVSEGLMKD SDDLPSNMNT VGSDVVAGGT SGLNSGAQWL QQYQQQALEF RQPSLVGSYM  240
ASQLAPQPLS VATGAMLDSI YSDGQITSPT VGAFSDPQTP GRKRGASGEV VDKVIERRQK  300
RMIKNRESAA RSRARKQAYT NELENKVSHL EEENERLKKQ KEFDEILSSA LPPEPKHQLR  360
RTSSAAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20340	0.0	callus\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG258500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808689.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	3e-83	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2T7ECB1	0.0	A0A2T7ECB1_9POAL; Uncharacterized protein
STRING	Pavir.J05672.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-81	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Pavir.3KG258500.1.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]