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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG255100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 406aa MW: 42681.4 Da PI: 6.2002 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG255100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 41.9 | 2.6e-13 | 75 | 156 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +++ + ++++fd+l+
Pavir.3KG255100.1.p 75 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKPVS-------SWQFFDRLD 156
*************************************87788876222667**************99887775.......599999986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MDDDDDVSPD ASPSPASSPG APSAALPVAD PVTVASAPPG GAYPVALPIH RTAASLYATA 60 GGGGGGGGGG REDAWSEGAT SALIDAWGER FVALGRGSLR HPQWQEVADA VSSRDGYSKA 120 PKSDVQCKNR IDTLKKKYKV ERAKPVSSWQ FFDRLDVLLA PTYGSKPGSG GSGGGHNSNS 180 RSPLPAALRM GFPQRSRTPL MPSAAAASKR RAPSPEPSVS SESSDGFPPV PALPAANGKR 240 RTDEGRADGG SGGDRTQGLR DLAQAIRRLG EAYERVEATK LEQAAEMERQ RIDFARELES 300 QRVQFFLNAQ MELTQAKNHA SPAAAAITAG ATTVGGSSRR MSMANDAGGS SNHHSRYRGS 360 HGDWHHHAPR SHYPQYHDNN HAAAAASEGE QSEEEDEDEE EEESQ*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 3e-33 | sequence-specific DNA binding transcription factors |