PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG251300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 306aa    MW: 32764.2 Da    PI: 5.8498
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG251300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.5e-294598255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         +rl+Wt +LH+rF  av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl
  Pavir.3KG251300.1.p 45 ARLKWTRDLHDRFGLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 98
                         7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2942102IPR009057Homeodomain-like
SuperFamilySSF466892.87E-1444101IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-214599IPR006447Myb domain, plants
PfamPF143793.1E-14158197IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLATPPTLLL RYGHTERRGG AVVGTLEMAS SCGGAQQQQG GEARARLKWT RDLHDRFGLA  60
VAQLGGADKA TPKSVLRAMA VPGLTLYHLK SHLQKYRLAV SRDLVTTPPG EGSNDRWSSS  120
SESQPDEHDE DAAAEWRGAF AASSTEEAPC DPPRSMARMQ REVQRKLQVQ IEVQRHLQLR  180
IEAQGRYLQS VLRRAEEVLA DHAVGSPELS ELASAVESGC LSSSSSLSPS PPRHRSAGSC  240
VTSSSSEGER QAGAGSKRPC TCAAAEQPVQ GSKRTFLQSH EEGEADADED AEAEDGSSPE  300
IDLNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-164499156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-164499156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-164499156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-164499156Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.164460.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG251300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822647.11e-127myb family transcription factor PHL8-like
SwissprotF4I2742e-44PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A3L6PR011e-136A0A3L6PR01_PANMI; Myb family transcription factor APL-like
STRINGPavir.J03046.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.17e-46G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]