PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG244800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 269aa    MW: 28766.6 Da    PI: 4.0348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG244800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201263156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Pavir.3KG244800.3.p 12 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 63
                         79*****999.**********8...2.489************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-311270No hitNo description
PfamPF008476.5E-141263IPR001471AP2/ERF domain
SMARTSM003805.1E-341376IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211370IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-221371IPR016177DNA-binding domain
PRINTSPR003678.3E-111425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-321471IPR001471AP2/ERF domain
PRINTSPR003678.3E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKGKGGPENT QCGYRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA RAYDEAARAM  60
YGEVARTNFP RQSAATASQV APVAQFAPAA TSAQFAPAAV ESLLPSTSCE STTTSNHSDI  120
ASTALKPEVS DISSSPKVDY PVVMEAGSHR SGVISGSSFQ HEDSDPSTQA SAPNAVDEEV  180
FEPLEPIANL PEGEDDGFDI EEMLRMMEAD PQNKGGVDAS IGQPFYLDGL DSSVLESMLQ  240
SEPEPYAMSQ EPDMFLAGFE SPGFFEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-161470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-1614721574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.2450.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG244800.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810001.11e-152dehydration-responsive element-binding protein 2B-like isoform X1
RefseqXP_025810002.11e-152dehydration-responsive element-binding protein 2B-like isoform X2
RefseqXP_025810003.11e-153dehydration-responsive element-binding protein 2B-like isoform X3
SwissprotQ5W6R44e-64DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A3L6SUI61e-158A0A3L6SUI6_PANMI; Dehydration-responsive element-binding protein 2B-like
STRINGPavir.Ca01725.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-25DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]