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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG244800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 36566.6 Da PI: 4.7894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 83 | 134 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++ge Pavir.3KG244800.1.p 83 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 134 79*****999.**********8...2.489************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.4E-14 | 83 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.28E-30 | 83 | 141 | No hit | No description |
SMART | SM00380 | 5.1E-34 | 84 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 84 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 84 | 142 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-32 | 85 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MTVDQKQAMP MQAQALQPGS RKKRPRRSRE GPTSVAAVIQ RWAEHNKQLE HGAEGAKRAR 60 KAPAKGSKKG CMKGKGGPEN TQCGYRGVRQ RTWGKWVAEI REPNRVNRLW LGTFPTAEDA 120 ARAYDEAARA MYGEVARTNF PRQSAATASQ VAPVAQFAPA ATSAQFAPAA VESLLPSTSC 180 ESTTTSNHSD IASTALKPEV SDISSSPKVD YPVVMEAGSH RSGVISGSSF QHEDSDPSTQ 240 ASAPNAVDEE VFEPLEPIAN LPEGEDDGFD IEEMLRMMEA DPQNKGGVDA SIGQPFYLDG 300 LDSSVLESML QSEPEPYAMS QEPDMFLAGF ESPGFFEGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 85 | 143 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.245 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG244800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ227697 | 1e-117 | DQ227697.1 Pennisetum glaucum transcription factor DREB2A gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810003.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X3 | ||||
Swissprot | Q5W6R4 | 2e-88 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A3L6SUI6 | 0.0 | A0A3L6SUI6_PANMI; Dehydration-responsive element-binding protein 2B-like | ||||
STRING | Pavir.Ca01725.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 3e-26 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG244800.1.p |
Publications ? help Back to Top | |||
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