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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG244300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
M-type_MADS |
Protein Properties |
Length: 243aa MW: 25095.3 Da PI: 10.7282 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG244300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 58.4 | 8.8e-19 | 24 | 66 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
i++ r vtfskR+ g +KKA+ELS LC+a va +ifss g+
Pavir.3KG244300.1.p 24 IKDRASRLVTFSKRKSGFFKKASELSLLCGAHVAAVIFSSAGR 66
899999**********************************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MVAPPRGTGR KSQGRRKRTE MALIKDRASR LVTFSKRKSG FFKKASELSL LCGAHVAAVI 60 FSSAGRPFAF GTPSVDHVLR LCAPLPAGDE DGLGSGLFPD DATDGGERGA VEGGGRGARG 120 RRGDADGRRR REGAPGRRES VVLVGGGRGG ARGGGAAGVR QGAPPAQGQC ATPRREAAAG 180 PCLAADDAAA VEPPQDAFLT DVHCSSSLGF SAIGLDGIEL LPRFQIINHF KNFGDSKFLK 240 FD*
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