 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3KG212300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 251aa MW: 27119.4 Da PI: 9.4179 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG212300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 48.7 | 1.3e-15 | 73 | 127 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+ ++++k+q +eLe++F++n+ ++++++e LA++l++t +qV vWF NrR + +k
Pavir.3KG212300.1.p 73 QYRKLSKDQSDELEAAFQQNNFIDKRTKEALAERLKITLKQVDVWFLNRRSRLRK 127
67789***********************************************997 PP
|
| 2 | HD-ZIP_I/II | 65.3 | 1.4e-21 | 74 | 161 | 3 | 90 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
r+lsk+q+ LE F++++ ++++ K++la++L+++ +qv+vWF nrR R +++q+E+d + k+++++l+++++rL+++ ++L+++
Pavir.3KG212300.1.p 74 YRKLSKDQSDELEAAFQQNNFIDKRTKEALAERLKITLKQVDVWFLNRRSRLRKQQVEEDLMQHKQQVEELTKQKNRLQRKIDKLKKR 161
59***********************************************************************************976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
HNDRSFLFVS LCVHYTGGGN DGSGNENDAT ELVLVDTTNH PQHAGQEDGG VLARSGVDVE 60
GDAGGGSFVR RTQYRKLSKD QSDELEAAFQ QNNFIDKRTK EALAERLKIT LKQVDVWFLN 120
RRSRLRKQQV EEDLMQHKQQ VEELTKQKNR LQRKIDKLKK RNKELKAKLK EATTQAAPPP 180
QPSPSVMLVP LPAALNTLAG LYPAGFEGNV TDMAAAAAAA LNTQQGSAAA AALPSSSAPP 240
VPPSDGRSSI *
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 120 | 126 | RRSRLRK |
| 2 | 120 | 127 | RRSRLRKQ |
| 3 | 155 | 160 | DKLKKR |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G47370.1 | 3e-16 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
