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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG210500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 260aa MW: 28062.5 Da PI: 9.0855 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.3 | 2.1e-29 | 39 | 93 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eCl+NhAa+lGgh+vDGCgEfmp g+ +alkCaACgCHR+FHR++ ++ Pavir.3KG210500.1.p 39 VARYHECLRNHAAALGGHVVDGCGEFMPGAGA--GDDALKCAACGCHRSFHRKDDAQ 93 579*************************8555..589****************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-18 | 40 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.0E-25 | 40 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.1E-25 | 41 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.31 | 42 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-30 | 169 | 233 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-19 | 169 | 233 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-27 | 175 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEFRGQEEPA EGMGASSAPP VAPSRAAPAP GNHAAPPEVA RYHECLRNHA AALGGHVVDG 60 CGEFMPGAGA GDDALKCAAC GCHRSFHRKD DAQRRQLLLP APAPPVTPTA PRVPLLLPPP 120 HPYAAASQPN YAPPPPLFPY HGTPSGSGGT TTESSSEERG PPSALAAAAQ GHLRRKRFRT 180 KFTPEQKEQM LAFAERLGWR MQKQDEALVQ QFCEQVGVRR QVFKVWMHNN KHTGSGSRRQ 240 PQLPPQEQQS QQQPPQQQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-28 | 176 | 237 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG210500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184921 | 1e-166 | KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810260.1 | 1e-121 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | B8AX53 | 2e-91 | ZHD6_ORYSI; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2T7E9Z6 | 1e-120 | A0A2T7E9Z6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J15638.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 5e-27 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG210500.1.p |