PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG194800.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 364aa    MW: 39915.6 Da    PI: 8.4987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG194800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.82.7e-33501961128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+P+d+el+ e+L+  ve+        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r   
  Pavir.3KG194800.4.p  50 LPAGVKFDPSDQELI-EHLESLVEEGGsrahplI---NdfipTIQGDdGICYTHPENLP-GVTRNGLSKHFFHRPSKAYTTGTRKRRRiq 134
                          799************.99*****99985665442...133333655546**********.455556789******************768 PP

                  NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k++kt+Wvmh+y+l
  Pavir.3KG194800.4.p 135 sergshgsedVGEARWHKTGKTRPVIV-GGRQKGCKKILVLYssYGKQGKPKKTNWVMHQYHL 196
                          999999988877999************.99************6558999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3545214IPR003441NAC domain
PROSITE profilePS5100532.05650214IPR003441NAC domain
PfamPF023652.2E-1451196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNRGHSGSMI SSCGTSELTD EKNKDSQTSA SRHCPSCGHS LECNPDMIGL PAGVKFDPSD  60
QELIEHLESL VEEGGSRAHP LINDFIPTIQ GDDGICYTHP ENLPGVTRNG LSKHFFHRPS  120
KAYTTGTRKR RRIQSERGSH GSEDVGEARW HKTGKTRPVI VGGRQKGCKK ILVLYSSYGK  180
QGKPKKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQLRST TVTVEHHTRD GDEKVAEASK  240
AMQNVLPGFT ADTTAVTVAM VPQRQQKRER QPDGHCSFAP AKMSHEVGVV GGKVAGDQGE  300
KRDNHHAPLQ HNVLSDLHAK PVPTMSFHVV GTPLNTVSTA ISPEAQDRSS SRRLGADLLN  360
WKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124819613140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127131RKRRR
2128132KRRRI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG194800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808651.10.0NAC domain-containing protein 73-like isoform X3
SwissprotQ9M0F82e-98NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2T8KI520.0A0A2T8KI52_9POAL; Uncharacterized protein
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-100NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]