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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG139200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 431aa MW: 47429.8 Da PI: 6.6412 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG139200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl
Pavir.3KG139200.2.p 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
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2 | Myb_DNA-binding | 47.7 | 3.7e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++eE++l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
Pavir.3KG139200.2.p 67 RGAFSQEEEDLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
89********************.*********.*********9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001944 | Biological Process | vasculature development |
GO:0009733 | Biological Process | response to auxin |
GO:0010089 | Biological Process | xylem development |
GO:0010119 | Biological Process | regulation of stomatal movement |
GO:0010214 | Biological Process | seed coat development |
GO:0048364 | Biological Process | root development |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPLA EADRNGAAPT ISTERTSGSS DVNPSSTGAL GNLSHLLSET AQSSMLLPVY 180 DKNQSEAPHL ARPKVPPKEL FLDQLTTGHK SPSTCRSSGQ TLYFPFQQPL GYSSESGSGD 240 GASMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNLP PDNPRHGGTG IGSASVDSFY 300 WDGTNPSSSS STGSRGSNSL GFEPQSTSSI LENSVFPWTD IAQEKDTRAH LGEELKWPDL 360 LHGTFAETTI AMQNQSQSLY DDVIKAESQF SMDGMCASWY QNQQPQQQLQ AAPDMYDKDL 420 QRMQVSFENI *
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Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT035751 | 0.0 | BT035751.1 Zea mays full-length cDNA clone ZM_BFb0081N12 mRNA, complete cds. |