PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.3KG136200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 703aa MW: 81690.6 Da PI: 7.3536

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG136200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.1	3.4e-19	98	211	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............................tekerrtraetr 59 +fYn+YAk++GF vr++ ++++ k +fvC+keg+++++k++ k+r++++ + Pavir.3KG136200.1.p 98 EFYNSYAKRIGFFVRTRVTREQ------NKVQFVCNKEGQQRKTKEEqpvaetddsnfdedsdpndcderaekkkkldGGKKRKREKMMH 181 6************9988777......4689*******99999*********************999988888999999 PP FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 t+Ckak++vk+ gkw+v++++ +HnH+l+ Pavir.3KG136200.1.p 182 TDCKAKMVVKLI-AGKWHVINFVPDHNHDLV 211 **********.9************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-17	98	211	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-6	335	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	563	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0074	574	601	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MDLNQFPSEV DFDFLDAVNT SPSYCTQVPL VDASVEGDER NGVDNPSNAD ATTQNADGCP 60 LNNQESTIVT EEVVEDIWLT PPVPYTGQAF STKQEAREFY NSYAKRIGFF VRTRVTREQN 120 KVQFVCNKEG QQRKTKEEQP VAETDDSNFD EDSDPNDCDE RAEKKKKLDG GKKRKREKMM 180 HTDCKAKMVV KLIAGKWHVI NFVPDHNHDL VLKPSLKKFL RSHKGIPKEE KDFIALLHGS 240 NLSTGRIMQL MNEFYGSAQL VPYEGKDVSN FCSTIRKAKK YKDVHETLDY FKELKDQDAE 300 FFYKIKLDED NRVESLFWVD GAARRAYIEL YNDLVTFDAT YMTNMYDIPF APFIGIKKHG 360 QSFMLGNCRW HIMDKFTGTI GHILDKDEKL EDDFKECMNY TVSPDEFEAK WSAMISKYNL 420 QENVHFQRLY AIRSSFVPAY YMHCFYVFLQ STQRSEGFNA VLKKYVNPNM SVLHFVRQYQ 480 KIQDKCLVAQ DGQDFRTDDK ERRKWSRYPI EKHVSTVYTK NLFYRFSKEF EKTAEYDVTP 540 EGQFQYLLVP NNNFVYGYGK RTYLVTAVVE EESYYCECSK FDRDGMLCCH IMKILTRLGV 600 KNIPQRYIMK RWTQEAIQGG ENAEPNAHVP AEFIARGMPL NTKRTLWFTN LSTAFASLAV 660 EGCVSKETYT VMDNHIKLMQ AEIAEIKQRK KSNARKARGA NRA

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MDLNQFPSEV DFDFLDAVNT SPSYCTQVPL VDASVEGDER NGVDNPSNAD ATTQNADGCP  60
LNNQESTIVT EEVVEDIWLT PPVPYTGQAF STKQEAREFY NSYAKRIGFF VRTRVTREQN  120
KVQFVCNKEG QQRKTKEEQP VAETDDSNFD EDSDPNDCDE RAEKKKKLDG GKKRKREKMM  180
HTDCKAKMVV KLIAGKWHVI NFVPDHNHDL VLKPSLKKFL RSHKGIPKEE KDFIALLHGS  240
NLSTGRIMQL MNEFYGSAQL VPYEGKDVSN FCSTIRKAKK YKDVHETLDY FKELKDQDAE  300
FFYKIKLDED NRVESLFWVD GAARRAYIEL YNDLVTFDAT YMTNMYDIPF APFIGIKKHG  360
QSFMLGNCRW HIMDKFTGTI GHILDKDEKL EDDFKECMNY TVSPDEFEAK WSAMISKYNL  420
QENVHFQRLY AIRSSFVPAY YMHCFYVFLQ STQRSEGFNA VLKKYVNPNM SVLHFVRQYQ  480
KIQDKCLVAQ DGQDFRTDDK ERRKWSRYPI EKHVSTVYTK NLFYRFSKEF EKTAEYDVTP  540
EGQFQYLLVP NNNFVYGYGK RTYLVTAVVE EESYYCECSK FDRDGMLCCH IMKILTRLGV  600
KNIPQRYIMK RWTQEAIQGG ENAEPNAHVP AEFIARGMPL NTKRTLWFTN LSTAFASLAV  660
EGCVSKETYT VMDNHIKLMQ AEIAEIKQRK KSNARKARGA NRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	178	KKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG136200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1W0VY60	0.0	A0A1W0VY60_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J00899.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-68	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG136200.1.p