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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG134000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 366aa MW: 38742.9 Da PI: 5.4079 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG134000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59 | 1e-18 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd+llv++++ +G g+W++ ar g++Rt+k+c++rw++yl
Pavir.3KG134000.1.p 43 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 90
89********************************************97 PP
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2 | Myb_DNA-binding | 48.9 | 1.6e-15 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
Pavir.3KG134000.1.p 96 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 139
7899******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MDMGMATGGG LDLDELKVLA MSPGGSAASA AAAGSEDEAD LRRGPWTVEE DLLLVNYIAA 60 HGEGRWNSLA RSAGLKRTGK SCRLRWLNYL RPDVRRGNIT AAEQLLILEL HSRWGNRWSK 120 IAQHLPGRTD NEIKNYWRTR VQKHAKQLRC DVNSRHFRDV VRRVWMPRLV ERIQAESSGA 180 GAGAGAGAAA EGGGQAQAAA APAVAPASTT ASAPAAYHLG PYGGHRQSAD VVVPPNGYAD 240 ADYYSYSEPG QAAAPAAMSP DNTSSALRST LTDASHAAQQ HHYATSAATP TNEGCGVGGK 300 AAGPMMDGDG VVQEEDEDVF AGTRSELLAT AGRDDDSNSK IGLPDFELGD FEMWSLEDLC 360 LQQLC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JF951909 | 1e-138 | JF951909.1 Triticum aestivum clone TaMYB26 R2R3-MYB protein mRNA, complete cds. |