PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG134000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 366aa    MW: 38742.9 Da    PI: 5.4079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG134000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-184390148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd+llv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Pavir.3KG134000.1.p 43 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 90
                         89********************************************97 PP
2Myb_DNA-binding48.91.6e-1596139146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.3KG134000.1.p  96 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 139
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9823894IPR017930Myb domain
SuperFamilySSF466891.72E-3040137IPR009057Homeodomain-like
SMARTSM007171.1E-154292IPR001005SANT/Myb domain
PfamPF002497.3E-174390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-224497IPR009057Homeodomain-like
CDDcd001671.44E-124590No hitNo description
SMARTSM007173.2E-1495143IPR001005SANT/Myb domain
PROSITE profilePS5129418.25295145IPR017930Myb domain
PfamPF002493.0E-1496139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2298144IPR009057Homeodomain-like
CDDcd001672.38E-11100139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDMGMATGGG LDLDELKVLA MSPGGSAASA AAAGSEDEAD LRRGPWTVEE DLLLVNYIAA  60
HGEGRWNSLA RSAGLKRTGK SCRLRWLNYL RPDVRRGNIT AAEQLLILEL HSRWGNRWSK  120
IAQHLPGRTD NEIKNYWRTR VQKHAKQLRC DVNSRHFRDV VRRVWMPRLV ERIQAESSGA  180
GAGAGAGAAA EGGGQAQAAA APAVAPASTT ASAPAAYHLG PYGGHRQSAD VVVPPNGYAD  240
ADYYSYSEPG QAAAPAAMSP DNTSSALRST LTDASHAAQQ HHYATSAATP TNEGCGVGGK  300
AAGPMMDGDG VVQEEDEDVF AGTRSELLAT AGRDDDSNSK IGLPDFELGD FEMWSLEDLC  360
LQQLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25401434106B-MYB
1gv2_A2e-25401431103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25411432103C-Myb DNA-Binding Domain
1msf_C2e-25411432103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG134000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519091e-138JF951909.1 Triticum aestivum clone TaMYB26 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.10.0transcription factor MYB2-like
TrEMBLA0A2S3H7R20.0A0A2S3H7R2_9POAL; Uncharacterized protein
STRINGPavir.J03771.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-81myb domain protein 112