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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG118200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 343aa MW: 38398 Da PI: 8.005 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 162 | 224 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 r+ W++eE +lv a ++ Wk + r+ + +Rt qcks+w+k Pavir.3KG118200.1.p 162 RKYWSEEENIRLVSAWLNNSNDpvkgndkkfyhYWKEVTREYNkyspkdRRRTVPQCKSHWNK 224 678***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.911 | 157 | 226 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEPSSSSASF TSLNNPSSTP DFPPVQSGYS QQYHSFPPPY FPPHIPPPPY ATNQQPHYAH 60 NFNPYVAPPG YQQFHPGSSS YPCFPYQGGV GQQQQEPSGV GMASDPSSPV GSTFFFGGTG 120 GGGSRGDESA SPVSIPQPVQ GGPVIEEECD SSPEEGKKNP GRKYWSEEEN IRLVSAWLNN 180 SNDPVKGNDK KFYHYWKEVT REYNKYSPKD RRRTVPQCKS HWNKNAPKVT KFNSCWHRMK 240 SAHGSGESDE QILERAHAVY KSENKQKPFL FEYWWRVIKD QPKWARVYPL ENKRLKLNAS 300 GAYTSSSNQD TDEASAPANP RPHEGTYQEQ SLKETANYVH NA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.34073 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG118200.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442326.2 | 2e-88 | glutathione S-transferase T3 | ||||
TrEMBL | A0A0A9C2Y8 | 7e-90 | A0A0A9C2Y8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J01793.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP449 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG118200.1.p |