PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG118200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 343aa MW: 38398 Da PI: 8.005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG118200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	162	224	1	46
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 r+ W++eE +lv a ++ Wk + r+ + +Rt qcks+w+k Pavir.3KG118200.1.p 162 RKYWSEEENIRLVSAWLNNSNDpvkgndkkfyhYWKEVTREYNkyspkdRRRTVPQCKSHWNK 224 678***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.911	157	226	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEPSSSSASF TSLNNPSSTP DFPPVQSGYS QQYHSFPPPY FPPHIPPPPY ATNQQPHYAH 60 NFNPYVAPPG YQQFHPGSSS YPCFPYQGGV GQQQQEPSGV GMASDPSSPV GSTFFFGGTG 120 GGGSRGDESA SPVSIPQPVQ GGPVIEEECD SSPEEGKKNP GRKYWSEEEN IRLVSAWLNN 180 SNDPVKGNDK KFYHYWKEVT REYNKYSPKD RRRTVPQCKS HWNKNAPKVT KFNSCWHRMK 240 SAHGSGESDE QILERAHAVY KSENKQKPFL FEYWWRVIKD QPKWARVYPL ENKRLKLNAS 300 GAYTSSSNQD TDEASAPANP RPHEGTYQEQ SLKETANYVH NA*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEPSSSSASF TSLNNPSSTP DFPPVQSGYS QQYHSFPPPY FPPHIPPPPY ATNQQPHYAH  60
NFNPYVAPPG YQQFHPGSSS YPCFPYQGGV GQQQQEPSGV GMASDPSSPV GSTFFFGGTG  120
GGGSRGDESA SPVSIPQPVQ GGPVIEEECD SSPEEGKKNP GRKYWSEEEN IRLVSAWLNN  180
SNDPVKGNDK KFYHYWKEVT REYNKYSPKD RRRTVPQCKS HWNKNAPKVT KFNSCWHRMK  240
SAHGSGESDE QILERAHAVY KSENKQKPFL FEYWWRVIKD QPKWARVYPL ENKRLKLNAS  300
GAYTSSSNQD TDEASAPANP RPHEGTYQEQ SLKETANYVH NA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.34073	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG118200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442326.2	2e-88	glutathione S-transferase T3
TrEMBL	A0A0A9C2Y8	7e-90	A0A0A9C2Y8_ARUDO; Uncharacterized protein
STRING	Pavir.J01793.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP449	6	10

Link Out ? help Back to Top
Phytozome	Pavir.3KG118200.1.p