 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3KG118100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
AP2 |
| Protein Properties |
Length: 487aa MW: 52714.3 Da PI: 7.0608 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG118100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.5 | 6.1e-17 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Pavir.3KG118100.1.p 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
78*******************......55************************997 PP
|
| 2 | AP2 | 41.2 | 4.2e-13 | 254 | 304 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Pavir.3KG118100.1.p 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 304
89********.7******5553..2.26**********99**********99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 487 aa
Download sequence Send
to blast |
MELDLNVAEV APEKTAAMAT SDSGSSESSV LNAEASSGGA APAEEGSSST PPPPAVLEFS 60
ILRSESDAAG ADDDDDATPS PPHHHHQQQP QLITRELFPA AAGPPRPLPQ HWADLGFFRA 120
EPPRPQPDIR ILPHPHATPP APPPVQPQAA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDMTQM KSLSKEEFVH 240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI 300
KCNGREAVTN FEPSTYDGEL LSEVGTEAGA DVDLNLSISQ PASQSPKRDK NSLGLQLHHG 360
SFEGSELKRT KVDTPHELAG RPHRFPVMTE HPPIWPAQSH PFFTNNESAS RDLNRRPSEG 420
GTGGGVPSWA WKVTAPPPTL PLPLFSSSSS SAAASSGFSN TATTAALATP SYASLRFDPP 480
SSSHHR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX402084 | 0.0 | JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds. |
