|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG070200.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bZIP |
Protein Properties |
Length: 385aa MW: 40873.8 Da PI: 7.878 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG070200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 67.1 | 3e-21 | 288 | 350 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++ +++L++eN +L++e+++++ke+++l s++
Pavir.3KG070200.1.p 288 ERELKRQRRKQSNRESARRSRLRKQAECEELAQHADVLKQENASLRDEVNRIRKEYEELLSKN 350
89**********************************************************998 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MGSSGADTPS KTSKASAPQE QQPPATSGAA TPAVYPDWSS FQAYPPIPPH GFFPSPVASS 60 PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTTYAMT SPNGYADATG 120 TTAAAGDTDR KPSEGKDKSP TKRSKGSLGS LNMLTGKNPT EHGKTSGASA NGATSQSGES 180 GSESSSEGSE GNSQNDSHHK ESGQEQDGDV RSSQNGASRS PSEGKLNQTM AIMPMPSSGP 240 VPGPTTNLNI GMDYWANTAS SAPAIHGKVT PTTVTGAVVP AEQWIQDERE LKRQRRKQSN 300 RESARRSRLR KQAECEELAQ HADVLKQENA SLRDEVNRIR KEYEELLSKN NSLKEKLEGK 360 QHKTDEAGLN KLQHSGDDSQ KKGN*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 304 | 310 | RRSRLRK |
2 | 304 | 311 | RRSRLRKQ |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT034769 | 0.0 | BT034769.2 Zea mays full-length cDNA clone ZM_BFb0017D08 mRNA, complete cds. |
GenBank | BT060689 | 0.0 | BT060689.1 Zea mays full-length cDNA clone ZM_BFb0034I13 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT1G32150.1 | 1e-73 | basic region/leucine zipper transcription factor 68 |