PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG063700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 202aa    MW: 20451.9 Da    PI: 6.4851
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG063700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.9e-07546641
             zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +++ e+   C  ++  lC+ C ++ H+       H++v 
  Pavir.3KG063700.1.p  5 CDACGRAEAAVLCCADEAALCRRCDSAVHSAnrlagrHSRVA 46
                         *****************************6577888888775 PP
2zf-B_box262e-086196437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                         ++C+ ++ek   +fC +++ llC+ C ++ H    H
  Pavir.3KG063700.1.p 61 PTCDICQEKTGYFFCLEDRALLCRPCDVAVHAAgaH 96
                         79****************************965673 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
CDDcd000215.55E-5547No hitNo description
SMARTSM003364.2E-8547IPR000315B-box-type zinc finger
PROSITE profilePS501199.11558105IPR000315B-box-type zinc finger
SMARTSM003361.8E-1258105IPR000315B-box-type zinc finger
PfamPF006431.7E-66196IPR000315B-box-type zinc finger
CDDcd000212.30E-46387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKIGCDACGR AEAAVLCCAD EAALCRRCDS AVHSANRLAG RHSRVALLPS TAIVDGSGSH  60
PTCDICQEKT GYFFCLEDRA LLCRPCDVAV HAAGAHVASH RRFLITGVRV GGGVGAVSPS  120
TSSGNGSSSA PSSSGNPRTM PDKARPSTSA SAAAATEGLG GQQWPWSDFL ADDVGVGMDH  180
LHPDLCCPAE ISEPGSSSLT G*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG063700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678206e-96AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805930.11e-94B-box zinc finger protein 23-like
SwissprotQ9SYM26e-44BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2T7E6271e-101A0A2T7E627_9POAL; Uncharacterized protein
STRINGPavir.Ca00343.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-33light-regulated zinc finger protein 1