PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG063600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 330aa    MW: 34842.3 Da    PI: 8.9213
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG063600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.4e-3296149357
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                          +vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+
  Pavir.3KG063600.1.p  96 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 149
                          69**************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-2997149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.8E-3098148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2298148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.68299148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.8E-29211283IPR009057Homeodomain-like
SuperFamilySSF466893.59E-18215283IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-27222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAMICSGAGV AAEEGSKQSM YLSGAQGELP VPMAMHGGGG GSPYLGLHHG HHHEHPQQHS  60
HGPNGRHMSP PEPEEAKKRQ LAVVPVGAVG GGVAGGVRYR ECLKNHAAAI GGSATDGCGE  120
FMPAGEEGSL DALRCSACGC HRNFHRKEPP GGDARQLHGH GHGHHHPLSP LAAAHHHRGL  180
LVAALPPAPT RMVMPLSAAM QAHHSAASAE SDDARAQQPP ARKRFRSKFT AEQKARMLGF  240
AEEAGWRLQK LDDAAVQRFC QEVGVKRRVL KVWMHNNKHT LARRGQEGGD DPPEHLGQLA  300
GGMPLPEPGG PGRSPSPSRS PPPQQLRLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG063600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432581e-141BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds.
GenBankBT0650051e-141BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds.
GenBankBT0655691e-141BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds.
GenBankEU9655081e-141EU965508.1 Zea mays clone 286516 mRNA sequence.
GenBankJX4285001e-141JX428500.1 Zea mays subsp. mays clone pUT3098 ZHD21 ZF-HD type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443023.11e-148zinc-finger homeodomain protein 3
RefseqXP_021321592.11e-148zinc-finger homeodomain protein 3
SwissprotQ2QW442e-78ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A3L6R8Y81e-159A0A3L6R8Y8_PANMI; Uncharacterized protein
STRINGPavir.Ca00340.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-54homeobox protein 31