PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 197aa MW: 21545.3 Da PI: 8.7668

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG051200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Pavir.3KG051200.1.p 14 KGAWTKEEDQRLVAYIKAHGEGSWRSLPNAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	58.9	1.2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+l++++++ lG++ W+ Ia +++ gRt++++k++w+++ Pavir.3KG051200.1.p 67 RGNFTEEEDDLIIKLHQILGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.956	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.12E-31	13	108	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.27E-10	16	61	No hit	No description
PROSITE profile	PS51294	27.579	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.60E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGSWRSL PNAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDDLIIK LHQILGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPKTHRQLR AAASSPFSRP LDQLAAAACS SCSPETSGAC HSSDDDCGGI DLNLSISPPR 180 GPPSSSPSSL PTTEEA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-31	14	116	7	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.23094	1e-131	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG051200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM156905	1e-133	AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBank	EU963911	1e-133	EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
GenBank	HQ858692	1e-133	HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977237.1	1e-103	myb-related protein Zm38
Swissprot	P81393	1e-86	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A3L6T2R3	1e-116	A0A3L6T2R3_PANMI; Myb-related protein Zm38-like
STRING	Pavir.Ca00231.1.p	1e-143	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-87	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Pavir.3KG051200.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]