PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG041500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 333aa    MW: 36220.8 Da    PI: 7.2222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG041500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.72e-22131193259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                          +Dgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v++++  +dp v+++tY+++H+++
  Pavir.3KG041500.1.p 131 EDGYEWRKYGEKKINGTSFTRSYFRCTYKddtGCLATKHVQQKDsiSDPPVFKVTYNNKHTCN 193
                          7***************************99999********975337**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-20126193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-22126194IPR003657WRKY domain
SMARTSM007742.1E-31130194IPR003657WRKY domain
PfamPF031061.6E-23131192IPR003657WRKY domain
PROSITE profilePS5081117.282131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDYCCATDRE HAVEVVAQVY ERIKIQQPLL ILHCPPSTTT QLTQSLLSEA LRALNVALSV  60
MKQQQQQSSS APAAPISIKA EPPSHGGAAP DPEAKTTSAA RRGKRRRTRM EAAAAGKTSS  120
SWAGLTTVPY EDGYEWRKYG EKKINGTSFT RSYFRCTYKD DTGCLATKHV QQKDSISDPP  180
VFKVTYNNKH TCNKYCTSAT NKSSDRQIIN PHPLNAAVMM NNVVVKQEPP AVLVLPPLVE  240
VEASSSALAF HHQTPPPPLI PIGGMQQQQP CGTDYHTPST TSSSCISGDS SCNGYYHSTG  300
GDMMMAAEEA SPGQDFLPDL ELFLLCDSFK DY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG041500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827911.11e-141WRKY transcription factor 55-like
TrEMBLA0A2T7E4J21e-147A0A2T7E4J2_9POAL; Uncharacterized protein
STRINGPavir.Ca00178.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-17WRKY family protein