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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG028600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bZIP |
Protein Properties |
Length: 379aa MW: 41676.9 Da PI: 7.0356 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG028600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 34.3 | 5e-11 | 74 | 103 | 5 | 34 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34
k rr+++NReAAr+sR+RKka+i++Le
Pavir.3KG028600.1.p 74 KTIRRLAQNREAARKSRLRKKAYIQQLESS 103
6789***********************974 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MRSAHTPKEG SNLTADSTDD SESSSRNNSN HSSDQLGAAT NMASQFDQVP QQQIQHKNMA 60 TSSTPKTEKT LDPKTIRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ 120 GLFLGGAPGA NTSSGAGMFD MEYARWLDEH GRRMAELHGA LHAHLPDGDL RAIVDNTLTH 180 HDELFQLKAV AAKSDAFHLI TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LEPLTEQQMV 240 GICNLQQSSQ QAEEALSQGL EQLHQSLADT MAGGSLIDDA NMSFMGQMAA ALGKLANLEV 300 FVIQADNLRQ QTLHQMHRIL TVRQAARCFL AIGEYHNCLR ALSSLRASRP REILVADEGN 360 CGEISIAAQP SQSQFSAF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF111321 | 0.0 | KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] - Miyamoto K, et al.
Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]
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