PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG017600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 484aa    MW: 50428.9 Da    PI: 11.2349
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG017600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS208.63.5e-644433939274
                 GRAS  39 qRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWp 126
                           R aa+f+ ALa++l++ v++l +al ++++s  ++  + aa++ ++++ P++k+++lt+N+aIlea+ege+ vH++D++  +s+++QW+
  Pavir.3KG017600.1.p  44 SRHAAVFADALARKLLSLVPGLLRALLSTANS-GEVHLVPAARRHLFDMVPFMKLAYLTTNHAILEAMEGEKFVHVVDLSgpASNPVQWV 132
                          699*********************99887776.567777789999**********************************87789****** PP

                 GRAS 127 aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhr 212
                          aL++a  +R++gpp+lRiT+v++     ke l +++  La+ Ae+l++pf+f++ v+ rledl++++L    rv++gEala+++v qlhr
  Pavir.3KG017600.1.p 133 ALFHAHRARRGGPPHLRITAVHD----GKEFLANMAGALARDAEALDIPFQFSA-VEARLEDLDPDALrqllRVRSGEALAISVVAQLHR 217
                          ***********************....9**************************.799*****9988766668999************** PP

                 GRAS 213 ll............................................................desvsleserdevLklvkslsPkvvvvv 242
                          ll                                                            ++s +++ +  ++L++v+ lsPk++vv+
  Pavir.3KG017600.1.p 218 LLvaddaagrsrlhvpgsscltpvhimarsspssfgellerelntrlqlspdspsvasslspQSSPAVAAKLGRFLQAVRALSPKIMVVA 307
                          *************************************************************9888888889******************* PP

                 GRAS 243 eqeadhnsesFlerflealeyysalfdsleak 274
                          e ea+hn++ Flerf eal+yy++lfd+le +
  Pavir.3KG017600.1.p 308 EPEANHNAAAFLERFEEALNYYASLFDCLERG 339
                          *****************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.7211412IPR005202Transcription factor GRAS
PfamPF035141.2E-6144339IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MTCMTCSPRR AGRRPRMRWG AVAAGATATR GGSRPLRARV SGPSRHAAVF ADALARKLLS  60
LVPGLLRALL STANSGEVHL VPAARRHLFD MVPFMKLAYL TTNHAILEAM EGEKFVHVVD  120
LSGPASNPVQ WVALFHAHRA RRGGPPHLRI TAVHDGKEFL ANMAGALARD AEALDIPFQF  180
SAVEARLEDL DPDALRQLLR VRSGEALAIS VVAQLHRLLV ADDAAGRSRL HVPGSSCLTP  240
VHIMARSSPS SFGELLEREL NTRLQLSPDS PSVASSLSPQ SSPAVAAKLG RFLQAVRALS  300
PKIMVVAEPE ANHNAAAFLE RFEEALNYYA SLFDCLERGG GAAAPVRGGA GAGGAAGAGG  360
GAPRGGGAGG RGAEGAARAA GAVGAADGGR RDGAGRDELR RHDGGEEATA EPRVGRLLRG  420
GPRRPRPGLL ILLAPEAALL RLRLEARRPC RHGGGFAAAA AACTITLHVC TASIPRAVFA  480
CVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-164420957217Protein SCARECROW
5b3h_A3e-164520957216Protein SCARECROW
5b3h_D3e-164520957216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG017600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.11e-178scarecrow-like protein 3
TrEMBLK3Y6U21e-177K3Y6U2_SETIT; Uncharacterized protein
STRINGPavir.J24604.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-56scarecrow-like 3