 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3KG017500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRAS |
| Protein Properties |
Length: 337aa MW: 38144 Da PI: 8.3411 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG017500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 239.2 | 1.8e-73 | 3 | 314 | 110 | 374 |
GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL... 194
+ v iiD++ s ++ QW+ Ll+ + R++gpp++R+T+v++ +++ l +++ L++ A++l++pf+f+ v rle+l++++L
Pavir.3KG017500.1.p 3 KVVRIIDLSCStaHPWQWLKLLHDFHGRQGGPPEVRLTVVHD----DNDYLANMRILLSNEADKLKIPFQFSS-VIGRLETLDFSNLrnt 87
6789****87633799**************************....9**************************.7999999999888544 PP
GRAS 195 .rvkpgEalaVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvv 240
++k gEa+a++++lq+hrll + + ++++ ++L++++ l+P+++
Pavir.3KG017500.1.p 88 lDIKYGEAIAISCSLQMHRLLvvddkvscsgigqlqkmaniaqlkqmassvyspastlnypqtpSPQCKMPKLLATFLNAIRVLKPNIML 177
47777********************************************************99988888999999*************** PP
GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
v+eq+a+hn+ F +rf+eal+yy+alfds++a ++++ +er+ vEr++lg+ei+n++ ceg +r erhe+l++W + ++++GF v
Pavir.3KG017500.1.p 178 VMEQDANHNALLFCDRFAEALNYYAALFDSFHAVVAANPrraDERAQVERMILGEEIKNILVCEGVHRHERHERLSQWAMHMDRSGFDHV 267
*******************************87764443344************************************************ PP
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
pls +a + + l ++ +g + + es++l+l+W +r L+s+SaWr
Pavir.3KG017500.1.p 268 PLSFRAIWEGNQKLMGFGLNGCQSKVESDCLLLCWGSRHLYSISAWR 314
**********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MNKVVRIIDL SCSTAHPWQW LKLLHDFHGR QGGPPEVRLT VVHDDNDYLA NMRILLSNEA 60
DKLKIPFQFS SVIGRLETLD FSNLRNTLDI KYGEAIAISC SLQMHRLLVV DDKVSCSGIG 120
QLQKMANIAQ LKQMASSVYS PASTLNYPQT PSPQCKMPKL LATFLNAIRV LKPNIMLVME 180
QDANHNALLF CDRFAEALNY YAALFDSFHA VVAANPRRAD ERAQVERMIL GEEIKNILVC 240
EGVHRHERHE RLSQWAMHMD RSGFDHVPLS FRAIWEGNQK LMGFGLNGCQ SKVESDCLLL 300
CWGSRHLYSI SAWRPHKGSA SGSREHMLVQ PQRQII*
|
