PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG017200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 271aa    MW: 29104.4 Da    PI: 8.6837
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG017200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.57.9e-40220818222
                 GRAS  18 elaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                          e+a ++L+r   la+ ++  p+ Rla  ++  La+rl r +v+ +++al   ++++ +   + aa ++f+e+sP++k +  +aN+  lea
  Pavir.3KG017200.1.p   2 EKAARCLSRATGLAAAARdGPLPRLAVPVADCLARRLIRpMVPAVAAALID-PSDHLDRRCVRAACRTFFELSPFPKAAVAVANRVTLEA 90 
                          56888999999995555538*******************777777766633.3333445556678899********************** PP

                 GRAS 106 vegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                          +e+e+ vH+iDf   + q+ QW+ Ll+ + sRpeg+p+lR+T+v++    + e l ++ e L++ A+el+vpf+ +  va ++e+l+l++
  Pavir.3KG017200.1.p  91 MENEKNVHVIDFAgpAAQPCQWIQLLRDFHSRPEGAPHLRLTVVHD----DGEFLARVSESLTDEADELDVPFQVHC-VAGQIEKLDLND 175
                          ************75589*****************************....***************************.7999****9999 PP

                 GRAS 194 L....rvkpgEalaVnlvlqlhrlldesvsles 222
                          L     +k+gEa a+ +  +lhrll+ s + + 
  Pavir.3KG017200.1.p 176 LhgvlGLKSGEARAIVCTTRLHRLLAASDDYAA 208
                          866557889****************77765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.061270IPR005202Transcription factor GRAS
PfamPF035142.7E-372208IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEKAARCLSR ATGLAAAARD GPLPRLAVPV ADCLARRLIR PMVPAVAAAL IDPSDHLDRR  60
CVRAACRTFF ELSPFPKAAV AVANRVTLEA MENEKNVHVI DFAGPAAQPC QWIQLLRDFH  120
SRPEGAPHLR LTVVHDDGEF LARVSESLTD EADELDVPFQ VHCVAGQIEK LDLNDLHGVL  180
GLKSGEARAI VCTTRLHRLL AASDDYAASS SSLSSAGHHS NQMAASIARL QQMAASCSAR  240
RASAAPRARM ATTATLTAAP PRRWASCRRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG017200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827469.11e-138scarecrow-like protein 3
TrEMBLA0A2S3ICA31e-136A0A2S3ICA3_9POAL; Uncharacterized protein
STRINGPavir.Ha01899.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-31scarecrow-like 3