PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG015600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 544aa    MW: 57973.5 Da    PI: 6.2807
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG015600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.11.9e-1041695421374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely....kalppsetseknsseelaalklfse 86 
                          lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +        a+   ++   +   +  al l +e
  Pavir.3KG015600.1.p 169 LVQLLVACAEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPALgpasMAFCIPPSCAGRDGARGEALALAYE 258
                          689**************************************************9865544311002222233333336777788899*** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAee 171
                          ++P+l+f+h++aN  Ilea+ege+ vH++D++++     G QW  Ll+ La+R++ +p ++ iTgvg+      ++++++g+ L+ +Ae 
  Pavir.3KG015600.1.p 259 LCPYLRFAHFVANASILEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARAGAKPkRVCITGVGA----AVDTMRAVGRELEAYAEG 344
                          ******************************98762222567*************66665*********....99**************** PP

                 GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                          lg+ +ef++ v ++le+l++++L ++ +Ea+a+n++l+lh +++es    +   +vL+++++lsPk +v+veq+a hn++ Fl rf+eal
  Pavir.3KG015600.1.p 345 LGMYLEFRA-VDRSLESLHIDDLGIDADEAVAINSILELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEAL 430
                          *********.799******************************88877777...8*********************************** PP

                 GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                          +yy+a+fd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    + a+  l++ + + gy+
  Pavir.3KG015600.1.p 431 HYYAAVFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIRMA--ARAREWLEENAgGGGYT 518
                          ********************************************************************865..567888888887999** PP

                 GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                          v ee+g+lvlgWk++p++++S+W+
  Pavir.3KG015600.1.p 519 VAEEKGCLVLGWKGKPVIAASCWK 542
                          ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.284143523IPR005202Transcription factor GRAS
PfamPF035146.5E-102169542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGMSEQPCRS SPSKFTTSYG SSQQIHHLPQ HDAVLCTEPG LGFPYYYGTD QQDAAFDGDE  60
VELGFRASKA TKVDYYSSPY QPSWPLPRAD VAAAAAESSR VRKQRFRDVL ESCKQKVEAM  120
EAMESPVAFQ EGEDGGIAGD GGSSAAAGGG GSGGGGGAGS GSGADGMRLV QLLVACAEAV  180
ACRDRAQAAA LLRELQVGAP VHGTAFQRVA SCFVQGLADR LALAHPPALG PASMAFCIPP  240
SCAGRDGARG EALALAYELC PYLRFAHFVA NASILEAFEG ESNVHVVDLG MTLGLDRGHQ  300
WRGLLDGLAA RAGAKPKRVC ITGVGAAVDT MRAVGRELEA YAEGLGMYLE FRAVDRSLES  360
LHIDDLGIDA DEAVAINSIL ELHCVVKESR GALNSVLQTI RKLSPKAFVL VEQDAGHNGP  420
FFLGRFMEAL HYYAAVFDAL DAALPRYDAR RARVEQFHFG AEIRNVVGCE GAARVERHER  480
ADQWRRRMSR AGFQSVPIRM AARAREWLEE NAGGGGYTVA EEKGCLVLGW KGKPVIAASC  540
WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-5517654125377Protein SCARECROW
5b3h_D6e-5517654125377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG015600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.10.0DELLA protein RGL1-like
TrEMBLA0A2T7DCV40.0A0A2T7DCV4_9POAL; Uncharacterized protein
STRINGSi000959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-63RGA-like 1