PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG007400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 327aa    MW: 35544.9 Da    PI: 6.9342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG007400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.55.5e-23109172359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE....EEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv....veitYegeHnhe 59 
                          Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r+++d+ +     +++Y geH+++
  Pavir.3KG007400.1.p 109 DGYQWRKYGQKQIEGAIYARSYYRCTRSaeqGCPAKRTVQRNDDDGGAaapkYTVVYMGEHTCT 172
                          9*************************988889*************97622225899*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-2399172IPR003657WRKY domain
SuperFamilySSF1182902.88E-21103172IPR003657WRKY domain
SMARTSM007742.7E-28107173IPR003657WRKY domain
PROSITE profilePS5081118.533109162IPR003657WRKY domain
PfamPF031061.5E-23109171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MLFFMPSPTT TKVDDDQSSS GGGTEGGQQP PASSSSSCCD GRRRRPRGSK RGRPQDDDSK  60
SYNGGEQHLE PPRHKSCKTS CSRKQQNKQR RQKMSGGTSS LVTSVPDFDG YQWRKYGQKQ  120
IEGAIYARSY YRCTRSAEQG CPAKRTVQRN DDDGGAAAPK YTVVYMGEHT CTPNDDSMEA  180
PPIILETTTV VPAVIKSTNN RRTPQDHHHD GTITVTSVAA PTSSSGGSYC SSSTSTNNTV  240
TAGIDDSPAI SDDITYWSRL FGVHDSWAPA TAAALQEMEE DYFTGPIRSP VHIAAADACW  300
TIEDHHLLLQ QLASNDQHPT VSHFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-1499171168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG007400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586321e-94KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828062.11e-84WRKY transcription factor 22-like isoform X1
TrEMBLA0A2T7E4I12e-86A0A2T7E4I1_9POAL; Uncharacterized protein
STRINGPavir.Ca00085.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.18e-16WRKY DNA-binding protein 54