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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG646200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GeBP |
Protein Properties |
Length: 440aa MW: 48094.9 Da PI: 9.5435 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG646200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 111.7 | 4.9e-35 | 81 | 180 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87
lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg +sf+++h+q
Pavir.2NG646200.1.p 81 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRHRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQA 170
79************************99877778***************************************8999************* PP
DUF573 88 ifelskkiWg 97
ife+++ iW+
Pavir.2NG646200.1.p 171 IFEIARNIWR 180
*********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MPPTGDDPSS AAGISFPGVD GGGGGDSEDA DFTGAHLLDP TDPNLPNPTT SSATGLPHAV 60 SAGGSGGGPI TSGNGGERRP LFQRLWTEED EIVILRGFAE FTAARGTAFA SHQYDTDPFY 120 EDMRHRLQLD FSKSQLVEKL RRLKRKYRNC VSRLRESGAT FSFRSPHEQA IFEIARNIWR 180 PTNKHSRDPS ADSDDEDAAA NTSPNGEVKS PSSRRQRRRR RATDFAAAAG TAPATGMVQP 240 PQPVQSLVSV PVKMEDSLPA LPQNPMPVMV TMDGSEPLRL PVMSPQSGVS DAEKSCLTPL 300 LKERMRAVIN VGTNPFGKKW RKQRILELEV YLKRIELLQD QAKATLEELN ASSPPRTRSG 360 RVKRRRDADG GSCGVGAWPS PSTSSSSPSP YRMEASAMDA ELRRVVDENR RLRGILQELT 420 RNYGTLYQQL LQVTQHPPR*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 213 | 218 | RRQRRR |
2 | 213 | 220 | RRQRRRRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT041652 | 0.0 | BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds. |
GenBank | EU969972 | 0.0 | EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds. |
GenBank | JX428455 | 0.0 | JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds. |
GenBank | KJ726797 | 0.0 | KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 2e-34 | DNA-binding storekeeper protein-related transcriptional regulator |