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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG626900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 303aa MW: 31833.8 Da PI: 6.8883 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG626900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 56.5 | 7e-18 | 58 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g
Pavir.2NG626900.1.p 58 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 106
56******.**********965...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010102 | Biological Process | lateral root morphogenesis |
GO:0010432 | Biological Process | bract development |
GO:0010451 | Biological Process | floral meristem growth |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MNTRGSGSSS GGGNPTLMAF SEHPKPASGQ PQPSPPSSPS ERPPAGRGRR RAQEPGRFLG 60 VRRRPWGRYA AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGAQAR TNFVYTHAAY 120 NYPPFLAPFH AQPSSYAHAP SSVQYGGAGA PHIVSYHHHH HHYQASAAGS GGASSSSGEC 180 SVPVAVDRAD GTLLMDRNGH DFLFASADDN SGYLSSVVPE SCLRPRSSAA AVEDLRRYSD 240 ADAYGMGMGL REDVDDLAQM VAGFWGGSGG DADQLCGPSG GGDMVASSQG SDGYSPFSFL 300 SH*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed at the time of rudimentary glumes differentiation in a half-ring domain at the base of the rudimentary glume primordium. |
Functional Description ? help
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Source |
Description |
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT036365 | 1e-138 | BT036365.1 Zea mays full-length cDNA clone ZM_BFb0108M21 mRNA, complete cds. |
GenBank | KJ727547 | 1e-138 | KJ727547.1 Zea mays clone pUT5407 AP2-EREBP transcription factor (EREB151) mRNA, partial cds. |
Publications
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- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM
Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L). BMC Plant Biol., 2003. 3: p. 6 [PMID:14503923] - Liu HQ, et al.
[Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)]. Yi Chuan Xue Bao, 2003. 30(9): p. 811-6 [PMID:14577371] - Jang S, et al.
The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice. Plant Mol. Biol., 2003. 53(3): p. 357-69 [PMID:14750524] - Rossini L, et al.
Candidate genes for barley mutants involved in plant architecture: an in silico approach. Theor. Appl. Genet., 2006. 112(6): p. 1073-85 [PMID:16501940] - Yi G, et al.
Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.). Hereditas, 2005. 142(2005): p. 92-7 [PMID:16970618] - Duan Y, et al.
Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice. Sci. China, C, Life Sci., 2003. 46(3): p. 328-34 [PMID:18763148] - Routledge AP, et al.
Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa). Mol. Plant Pathol., 2004. 5(4): p. 253-65 [PMID:20565594] - Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] - Derbyshire P,Byrne ME
MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium. Plant Physiol., 2013. 161(3): p. 1291-302 [PMID:23355632] - Poursarebani N, et al.
The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'. Genetics, 2015. 201(1): p. 155-65 [PMID:26156223] - Bai X, et al.
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119] - Ma X, et al.
Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing. Sci Rep, 2016. 6: p. 27425 [PMID:27251022]
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